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visualizeSBMLModel


visualizeSBMLModel[filename, options]

is an experimental visualization function. It uses the Mathematica-native GraphPlot function to generate a visualization of the model reactions. (Rule, events are not included). Options are any Plot options.

New in version 2.6.1; GraphPlot requires Mathematica 5.1

Options

OptionDefaultDescription
visualizationArrowLength15 Length of arrow head in pixels.
visualizationBoxHeight0.05 Height of boxes (relative coordinates).
visualizationBoxWidth0.15 Width of boxes (relative coordinates).
visualizationFontFamilyTimesFont family for annotations.
visualizationFontSize12 Font size for annotations.
visualizationHeaderFontSize18 Font size for header (model id).
visualizationRadius0.025 Radius of ovals used for species.

Example

HTML   Mathematica Notebook